Trilinos — Make — список аргументов слишком длинный

Мне нужно скомпилировать мой код, который использует Trilinos. Проблема в том, что каждый раз, когда я получаю эту ошибку:

c++: error trying to exec '/usr/lib/gcc/x86_64-linux-gnu/4.9/cc1plus': execv: Argument list too long

Я не знаю, как я мог правильно скомпилировать мой код — мой Makefile переписан из одного примера, в оригинальной документации говорится, что мы должны использовать только GNU Make. Но я уже использую это 🙂

Итак, мне нужно скомпилировать мой код, где я использую пакет Epetra, и мне нужно, чтобы он мог использовать MPI.

Я пытался решить это с помощью env -i, но это только вызвало другую проблему, о которой я спрашивал Вот.

Мои файлы

.do-configure (файл для настройки Trilinos)

#!/bin/bash

# Set this to the root of your Trilinos source directory.
TRILINOS_SOURCE_PATH=~/Stazene/trilinos-11.12.1-Source

#
# You can invoke this shell script with additional command-line
# arguments.  They will be passed directly to CMake.
#
EXTRA_ARGS=$@

#
# Each invocation of CMake caches the values of build options in a
# CMakeCache.txt file.  If you run CMake again without deleting the
# CMakeCache.txt file, CMake won't notice any build options that have
# changed, because it found their original values in the cache file.
# Deleting the CMakeCache.txt file before invoking CMake will insure
# that CMake learns about any build options you may have changed.
# Experience will teach you when you may omit this step.
#
rm -f CMakeCache.txt

#
# Enable all primary stable Trilinos packages.
#
cmake \
-D CMAKE_INSTALL_PREFIX:FILEPATH="~/.trilinos" \
-D CMAKE_BUILD_TYPE:STRING=DEBUG \
-D CMAKE_C_COMPILER=/usr/bin/mpicc \
-D CMAKE_CXX_COMPILER=/usr/bin/mpicxx \
-D CMAKE_Fortran_COMPILER=/usr/bin/mpif90 \
-D TPL_ENABLE_MPI:BOOL=ON \
-D MPI_BASE_DIR:FILEPATH="/usr/include/mpi" \
-D MPI_EXEC:FILEPATH="/usr/include/mpiexec" \
-D Boost_INCLUDE_DIRS="/usr/include/boost" \
-D Trilinos_ENABLE_Fortran:BOOL=OFF \
-D Trilinos_ENABLE_SECONDARY_TESTED_CODE=ON \
-D Trilinos_ENABLE_TESTS:BOOL=ON \
-D Trilinos_ENABLE_Epetra=ON \
-D Trilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
$EXTRA_ARGS \
$TRILINOS_SOURCE_PATH

Makefile

# CMAKE File for "MyApp" application building against an installed Trilinos

#This file is an adaptation of the CMakeLists.txt file that was converted from
#the buildAgainstTrilinos example. This Makefile was designed to be used in a
#flat directory structure. If you would like to run this example you will need
#put this file and src_file.cpp, src_file.hpp, main_file.cpp from
#buildAgainstTrilinos into a new directory. You will then need to set the
#environment variable MYAPP_TRILINOS_DIR to point to your base installation of
#Trilinos. Note that this example assumes that the installation of Trilinos that
#you point to has Epetra enabled.

# Get Trilinos as one entity
include ~/.trilinos/Makefile.export.Trilinos

# Make sure to use same compilers and flags as Trilinos
CXX_WITH_ECHO=$(Trilinos_CXX_COMPILER)
CXX_WITHOUT_ECHO=@$(Trilinos_CXX_COMPILER)

CXX=$(CXX_WITHOUT_ECHO)
CC=$(Trilinos_C_COMPILER)
FORT=$(Trilinos_Fortran_COMPILER)

CXX_FLAGS=$(Trilinos_CXX_COMPILER_FLAGS) $(USER_CXX_FLAGS)
C_FLAGS=$(Trilinos_C_COMPILER_FLAGS) $(USERC_FLAGS)
FORT_FLAGS=$(Trilinos_Fortran_COMPILER_FLAGS) $(USER_FORT_FLAGS)

INCLUDE_DIRS=$(Trilinos_INCLUDE_DIRS) $(Trilinos_TPL_INCLUDE_DIRS)
LIBRARY_DIRS=$(Trilinos_LIBRARY_DIRS) $(Trilinos_TPL_LIBRARY_DIRS)
LIBRARIES=$(Trilinos_LIBRARIES) $(Trilinos_TPL_LIBRARIES)

LINK_FLAGS=$(Trilinos_EXTRA_LD_FLAGS)

#just assuming that epetra is turned on.
DEFINES=-DMYAPP_EPETRAdefault: build_all

# Echo trilinos build info just for fun
info:
@echo "\nFound Trilinos!  Here are the details: "@echo "   Trilinos_VERSION = $(Trilinos_VERSION)"@echo "   Trilinos_PACKAGE_LIST = $(Trilinos_PACKAGE_LIST)"@echo "   Trilinos_LIBRARIES = $(Trilinos_LIBRARIES)"@echo "   Trilinos_INCLUDE_DIRS = $(Trilinos_INCLUDE_DIRS)"@echo "   Trilinos_LIBRARY_DIRS = $(Trilinos_LIBRARY_DIRS)"@echo "   Trilinos_TPL_LIST = $(Trilinos_TPL_LIST)"@echo "   Trilinos_TPL_INCLUDE_DIRS = $(Trilinos_TPL_INCLUDE_DIRS)"@echo "   Trilinos_TPL_LIBRARIES = $(Trilinos_TPL_LIBRARIES)"@echo "   Trilinos_TPL_LIBRARY_DIRS = $(Trilinos_TPL_LIBRARY_DIRS)"@echo "   Trilinos_BUILD_SHARED_LIBS = $(Trilinos_BUILD_SHARED_LIBS)"@echo "End of Trilinos details\n"
build_all: test.out
@echo "CXX_FLAGS: $(CXX_FLAGS)"
# build the
test.out: test.o
$(CXX) $(CXX_FLAGS) test.cpp -o test.out $(LINK_FLAGS) $(INCLUDE_DIRS) $(DEFINES) $(LIBRARY_DIRS) $(LIBRARIES)

test.o:
$(CXX) -c $(CXX_FLAGS) $(INCLUDE_DIRS) $(DEFINES) test.cpp

.PHONY: clean
clean:
rm -f *.o *.a *.exe *.out

.Файл CPP

//
// This example includes conditional MPI initialization, getting an
// Epetra communicator wrapper, and printing out Epetra version
// information.
//

// This defines useful macros like HAVE_MPI, which is defined if and
// only if Epetra was built with MPI enabled.
#include <Epetra_config.h>

#ifdef HAVE_MPI
// Your code is an existing MPI code, so it presumably includes mpi.h directly.
#  include <mpi.h>
// Epetra's wrapper for MPI_Comm.  This header file only exists if
// Epetra was built with MPI enabled.
#  include <Epetra_MpiComm.h>
#else
#  include <Epetra_SerialComm.h>
#endif // HAVE_MPI

#include <Epetra_Version.h>//
// ... Your other include files go here ...
//

// Do something with the given communicator.  In this case, we just
// print Epetra's version to the given output stream, on Process 0.
void exampleRoutine (const Epetra_Comm& comm, std::ostream& out) {
if (comm.MyPID () == 0) {
// On (MPI) Process 0, print out the Epetra software version.
out << Epetra_Version () << std::endl << std::endl;
}
}

int main (int argc, char *argv[]) {
// These "using" declarations make the code more concise, in that
// you don't have to write the namespace along with the class or
// object name.  This is especially helpful with commonly used
// things like std::endl.
using std::cout;
using std::endl;

#ifdef HAVE_MPI
// Start up MPI, if using MPI.  Trilinos doesn't have to be built
// with MPI; it's called a "serial" build if you build without MPI.
//
// It's bad form to ignore the error codes returned by MPI
// functions, but we do so here for brevity.
(void) MPI_Init (&argc, &argv);
cout << "MPI ok" << endl;

// Wrap MPI_COMM_WORLD in an Epetra communicator wrapper.
// Epetra_MpiComm is a subclass of Epetra_Comm, so you may use it
// wherever an Epetra_Comm is required.
Epetra_MpiComm comm (MPI_COMM_WORLD);
#else
// Make a "serial" (non-MPI) communicator.  It doesn't actually
// "communicate," because it only has one process, whose rank is
// always 0.  Epetra_SerialComm is a subclass of Epetra_Comm, so you
// may use it wherever an Epetra_Comm is required.
Epetra_SerialComm comm;
cout << "Serial" << endl;
#endif

// Epetra_Comm has methods that wrap basic MPI functionality.
// MyPID() is equivalent to MPI_Comm_rank, and NumProc() to
// MPI_Comm_size.
//
// With a "serial" communicator, the rank is always 0, and the
// number of processes is always 1.
const int myRank = comm.MyPID ();
const int numProcs = comm.NumProc ();

cout << "My PID is:" << myRank << endl;

if (myRank == 0) {
cout << "Total number of processes: " << numProcs << endl;
}

// Do something with the new Epetra communicator.
exampleRoutine (comm, cout);

// This tells the Trilinos test framework that the test passed.
if (comm.MyPID () == 0) {
cout << "End Result: TEST PASSED" << endl;
}

#ifdef HAVE_MPI
// Since you called MPI_Init, you are responsible for calling
// MPI_Finalize after you are done using MPI.
(void) MPI_Finalize ();
#endif // HAVE_MPI

return 0;
}